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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: SATB1

Summary

GeneID

6304

Symbol

SATB1

Synonyms

Description

SATB homeobox 1

Locus tag

Gene type

protein-coding

Map location

3p23

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.006

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

Gene Expression ?

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003690

double-stranded DNA binding

TAS

1505028

GO:0003700

transcription factor activity

IEA

GO:0043565

sequence-specific DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000122

negative regulation of transcription from RNA polymerase II promoter

IMP

15851481

GO:0006325

establishment or maintenance of chromatin architecture

IEA

GO:0006325

establishment or maintenance of chromatin architecture

TAS

1505028

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0016571

histone methylation

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005634

nucleus

TAS

1505028

GO:0005720

nuclear heterochromatin

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BAZ1A	ACF1 \| DKFZp586E0518 \| FLJ14383 \| WALp1 \| WCRF180 \| hACF1	bromodomain adjacent to zinc finger domain, 1A	Co-fractionation Reconstituted Complex	BioGRID	12374985
CHD3	Mi-2a \| Mi2-ALPHA \| ZFH	chromodomain helicase DNA binding protein 3	-	HPRD	12374985
CHD4	DKFZp686E06161 \| Mi-2b \| Mi2-BETA	chromodomain helicase DNA binding protein 4	Affinity Capture-Western Co-fractionation	BioGRID	12374985
CUX1	CASP \| CDP \| CDP/Cut \| CDP1 \| COY1 \| CUTL1 \| CUX \| Clox \| Cux/CDP \| GOLIM6 \| Nbla10317 \| p100 \| p110 \| p200 \| p75	cut-like homeobox 1	-	HPRD,BioGRID	10373541
HDAC1	DKFZp686H12203 \| GON-10 \| HD1 \| RPD3 \| RPD3L1	histone deacetylase 1	-	HPRD,BioGRID	12374985
HDAC2	RPD3 \| YAF1	histone deacetylase 2	Co-fractionation	BioGRID	12374985
MTA2	DKFZp686F2281 \| MTA1L1 \| PID	metastasis associated 1 family, member 2	-	HPRD,BioGRID	12374985
POLR2J	MGC71910 \| POLR2J1 \| RPB11 \| RPB11A \| RPB11m \| hRPB14	polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa	Reconstituted Complex Two-hybrid	BioGRID	12036295
SATB1	-	SATB homeobox 1	-	HPRD	12374985
SIN3A	DKFZp434K2235 \| FLJ90319 \| KIAA0700	SIN3 homolog A, transcription regulator (yeast)	Co-fractionation	BioGRID	12374985
SMARCA5	ISWI \| SNF2H \| WCRF135 \| hISWI \| hSNF2H	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	-	HPRD,BioGRID	12374985
UBE2I	C358B7.1 \| P18 \| UBC9	ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)	Two-hybrid	BioGRID	16189514

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-137	873	879	m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-153	909	915	1A	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-153	909	915	1A	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-155	334	340	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-18	962	968	1A	hsa-miR-18a	UAAGGUGCAUCUAGUGCAGAUA
miR-18	962	968	1A	hsa-miR-18b	UAAGGUGCAUCUAGUGCAGUUA
miR-186	1155	1161	1A	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-19	123	129	1A	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	123	129	1A	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-194	1118	1124	1A	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-208	804	810	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-21	933	939	m8	hsa-miR-21^brain	UAGCUUAUCAGACUGAUGUUGA
miR-21	933	939	m8	hsa-miR-590	GAGCUUAUUCAUAAAAGUGCAG
miR-219	1028	1034	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-23	640	647	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
				hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-30-5p	1024	1030	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-323	640	646	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-323	640	646	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-34/449	539	545	m8	hsa-miR-34a^brain	UGGCAGUGUCUUAGCUGGUUGUU
				hsa-miR-34c	AGGCAGUGUAGUUAGCUGAUUGC
				hsa-miR-449	UGGCAGUGUAUUGUUAGCUGGU
				hsa-miR-449b	AGGCAGUGUAUUGUUAGCUGGC
miR-376	1100	1106	1A	hsa-miR-376a	AUCAUAGAGGAAAAUCCACGU
miR-376	1100	1106	1A	hsa-miR-376b	AUCAUAGAGGAAAAUCCAUGUU
miR-376c	861	867	m8	hsa-miR-376c	AACAUAGAGGAAAUUCCACG
miR-381	525	531	m8	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-448	975	981	1A	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-448	975	981	1A	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-485-5p	323	329	1A	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-495	1116	1122	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-495	1116	1122	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-499	804	810	1A	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-544	1162	1169	1A,m8	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU
miR-7	1013	1019	m8	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.