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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: VCAM1

Summary

GeneID

7412

Symbol

VCAM1

Synonyms

CD106|DKFZp779G2333|INCAM-100|MGC99561

Description

vascular cell adhesion molecule 1

See related

HGNC:12663|MIM:192225|Ensembl:ENSG00000162692|HPRD:01888|

Locus tag

-

Gene type

protein-coding

Map location

1p32-p31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

Gene Expression ?

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

integrin binding

IDA

protein binding

IEA

-

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

heterophilic cell adhesion

IDA

membrane to membrane docking

IEP

B cell differentiation

IC

positive regulation of T cell proliferation

IDA

interspecies interaction between organisms

IEA

-

leukocyte tethering or rolling

IEP

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

extracellular space

IDA

microvillus

IDA

external side of plasma membrane

IDA

membrane

IEA

-

integral to membrane

IEA

-

filopodium

IDA

axon (GO term level: 5)

apical part of cell

IDA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CCL17	A-152E5.3 \| ABCD-2 \| MGC138271 \| MGC138273 \| SCYA17 \| TARC	chemokine (C-C motif) ligand 17	-	HPRD,BioGRID	12193695
CCL22	A-152E5.1 \| ABCD-1 \| DC/B-CK \| MDC \| MGC34554 \| SCYA22 \| STCP-1	chemokine (C-C motif) ligand 22	-	HPRD,BioGRID	12193695
EZR	CVIL \| CVL \| DKFZp762H157 \| FLJ26216 \| MGC1584 \| VIL2	ezrin	-	HPRD,BioGRID	12082081
IL13	ALRH \| BHR1 \| IL-13 \| MGC116786 \| MGC116788 \| MGC116789 \| P600	interleukin 13	-	HPRD,BioGRID	7521694
ITGAD	ADB2 \| CD11D \| FLJ39841	integrin, alpha D	-	HPRD,BioGRID	10438935
ITGB1	CD29 \| FNRB \| GPIIA \| MDF2 \| MSK12 \| VLA-BETA \| VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	-	HPRD	12097820
ITGB7	-	integrin, beta 7	-	HPRD	12682249
MSN	-	moesin	-	HPRD,BioGRID	12082081
MSN	-	moesin	-	HPRD	7884872\|12082081
SEC61B	-	Sec61 beta subunit	VCAM1 interacts with SEC61B. This interaction was modeled on a demonstrated interaction between human VCAM1 and canine SEC61B.	BIND	16015337

KEGG Pathway Info

hsa04514: Cell adhesion molecules (CAMs) - Homo sapiens (human)	Go to KEGG	All SZGR genes in this pathway
hsa04670: Leukocyte transendothelial migration - Homo sapiens (human)	Go to KEGG	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-496	263	269	1A	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.

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