Gene Set: Association


     Gene set description
  • Name: Association
  • Method: A combined odds ratio method (Sun et al. 2008), association studies
  • Number of genes: 281
  • Reference: SchizophreniaGene Database
  • Summary: This Association data set was collected from the recently established SchizophreniaGene Database, which includes more than 2500 association studies for more than 700 genes (as of 05/30/2009). We downloaded their genotyping data and processed them by a data cleaning and risk-allele evaluation pipeline developed in our recent combined odds ratio (OR) method (Sun et al. (2008)). We selected genes that had significant P value using our combined OR method or at least one positive association result in publication. Currently, this gene set contains 278 protein-coding genes, 2 miscRNA genes and 1 gene with unknown gene-type.  Detailed information can be found here.
     Gene List

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Sort by   Gene ID   Symbol    Full Name   Location 

Gene ID Symbol Official Full Name Location
260425MAGI3membrane associated guanylate kinase, WW and PDZ domain containing 31p12-p11.2
2944GSTM1glutathione S-transferase mu 11p13.3
22854NTNG1netrin G11p13.3
2730GCLMglutamate-cysteine ligase, modifier subunit1p22.1
5142PDE4Bphosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)1p31
2899GRIK3glutamate receptor, ionotropic, kainate 31p34-p33
3362HTR65-hydroxytryptamine (serotonin) receptor 61p36-p35
8863PER3period homolog 3 (Drosophila)1p36.23
4524MTHFR5,10-methylenetetrahydrofolate reductase (NADPH)1p36.3
2703GJA8gap junction protein, alpha 8, 50kDa1q21.1
23208SYT11synaptotagmin XI1q21.2
3782KCNN3potassium intermediate/small conductance calcium-activated channel, subfamily N, member 31q21.3
5999RGS4regulator of G-protein signaling 41q23.3
9722NOS1APnitric oxide synthase 1 (neuronal) adaptor protein1q23.3
127933UHMK1U2AF homology motif (UHM) kinase 11q23.3
9019MPZL1myelin protein zero-like 11q24.2
5321PLA2G4Aphospholipase A2, group IVA (cytosolic, calcium-dependent)1q25
5743PTGS2prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)1q25.2-q25.3
3586IL10interleukin 101q31-q32
1116CHI3L1chitinase 3-like 1 (cartilage glycoprotein-39)1q32.1
5362PLXNA2plexin A21q32.2
8443GNPATglyceronephosphate O-acyltransferase1q42
8564KMOkynurenine 3-monooxygenase (kynurenine 3-hydroxylase)1q42-q44
7257TSNAXtranslin-associated factor X1q42.1
27185DISC1disrupted in schizophrenia 11q42.1
4548MTR5-methyltetrahydrofolate-homocysteine methyltransferase1q43
5305PIP4K2Aphosphatidylinositol-5-phosphate 4-kinase, type II, alpha10p12.2
1316KLF6Kruppel-like factor 610p15
1103CHATcholine acetyltransferase10q11.2
5660PSAPprosaposin10q21-q22
3363HTR75-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)10q21-q24
2894GRID1glutamate receptor, ionotropic, delta 110q22
10718NRG3neuregulin 310q22-q23
6571SLC18A2solute carrier family 18 (vesicular monoamine), member 210q25
627BDNFbrain-derived neurotrophic factor11p13
5080PAX6paired box 611p13
6506SLC1A2solute carrier family 1 (glial high affinity glutamate transporter), member 211p13-p12
7166TPH1tryptophan hydroxylase 111p15.3-p14
1815DRD4dopamine receptor D411p15.5
7054THtyrosine hydroxylase11p15.5
7351UCP2uncoupling protein 2 (mitochondrial, proton carrier)11q13
4135MAP6microtubule-associated protein 611q13.5
2915GRM5glutamate receptor, metabotropic 511q14.2-q14.3
2893GRIA4glutamate receptor, ionotrophic, AMPA 411q22
3606IL18interleukin 18 (interferon-gamma-inducing factor)11q22.2-q22.3
2900GRIK4glutamate receptor, ionotropic, kainate 411q22.3
486FXYD2FXYD domain containing ion transport regulator 211q23
1813DRD2dopamine receptor D211q23
3587IL10RAinterleukin 10 receptor, alpha11q23
3359HTR3A5-hydroxytryptamine (serotonin) receptor 3A11q23.1
3145HMBShydroxymethylbilane synthase11q23.3
53826FXYD6FXYD domain containing ion transport regulator 611q23.3
4900NRGNneurogranin (protein kinase C substrate, RC3)11q24
2904GRIN2Bglutamate receptor, ionotropic, N-methyl D-aspartate 2B12p12
5288PIK3C2Gphosphoinositide-3-kinase, class 2, gamma polypeptide12p12
2784GNB3guanine nucleotide binding protein (G protein), beta polypeptide 312p13
4908NTF3neurotrophin 312p13
1822ATN1atrophin 112p13.31
920CD4CD4 molecule12pter-p12
8914TIMELESStimeless homolog (Drosophila)12q12-q13
2065ERBB3v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)12q13
5074PAWRPRKC, apoptosis, WT1, regulator12q21
1610DAOD-amino-acid oxidase12q24
4842NOS1nitric oxide synthase 1 (neuronal)12q24.2-q24.31
160777CCDC60coiled-coil domain containing 6012q24.23
3356HTR2A5-hydroxytryptamine (serotonin) receptor 2A13q14-q21
2098ESDesterase D/formylglutathione hydrolase13q14.1-q14.2
3839KPNA3karyopherin alpha 3 (importin alpha 4)13q14.3
5100PCDH8protocadherin 813q14.3-q21.1
688KLF5Kruppel-like factor 5 (intestinal)13q22.1
3843IPO5importin 513q32.2
267012DAOAD-amino acid oxidase activator13q33.2|13q34
2259FGF14fibroblast growth factor 1413q34
23002DAAM1dishevelled associated activator of morphogenesis 114q23.1
4522MTHFD1methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase14q24
4287ATXN3ataxin 314q24.3-q32.2
1113CHGAchromogranin A (parathyroid secretory protein 1)14q32
207AKT1v-akt murine thymoma viral oncogene homolog 114q32.32|14q32.32
89832CHRFAM7ACHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion15q13.1
1139CHRNA7cholinergic receptor, nicotinic, alpha 715q14
1544CYP1A2cytochrome P450, family 1, subfamily A, polypeptide 215q24.1
1133CHRM5cholinergic receptor, muscarinic 515q26
8128ST8SIA2ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 215q26
2903GRIN2Aglutamate receptor, ionotropic, N-methyl D-aspartate 2A16p13.2
2775GNAO1guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O16q13
3240HPhaptoglobin16q22.1
10400PEMTphosphatidylethanolamine N-methyltransferase17p11.2
63826SRRserine racemase17p13
7157TP53tumor protein p5317p13.1
7531YWHAEtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide17p13.3
6532SLC6A4solute carrier family 6 (neurotransmitter transporter, serotonin), member 417q11.1-q12
84152PPP1R1Bprotein phosphatase 1, regulatory (inhibitor) subunit 1B17q12
1267CNP2',3'-cyclic nucleotide 3' phosphodiesterase17q21
55163PNPOpyridoxamine 5'-phosphate oxidase17q21.32
116ADCYAP1adenylate cyclase activating polypeptide 1 (pituitary)18p11
753C18orf1chromosome 18 open reading frame 118p11.2
3613IMPA2inositol(myo)-1(or 4)-monophosphatase 218p11.2
2774GNALguanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type18p11.22-p11.21
4729NDUFV2NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa18p11.31-p11.2
5289PIK3C3phosphoinositide-3-kinase, class 318q12.3

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